Steve and Henry, thanks.
Pulling the few were a pita as you said. A lot of squeaks in this floor and other rooms. The spiral nails seem to be working themselves loose, many are proud of the surface.
What are your thoughts on them working loose again if I set them? They’d easily telegraph through vinyl planking.
The reason the floor squeaks is due to the plywood sliding up and down the loose nails, if you screw down the floor tight next to the nails it won't squeak anymore. I'm thinking the nails won't work themselves loose either as there is no force pulling them up.
The "wood" has dried out completely by now, so there won't be any more shrinkage to give any play between the wood and nails that makes them pull up while walking on them.
If you nail set them deeper into the plywood I don't think they will be a problem.
I would stay about an inch away from each nail with the screws.
I never tried this btw, I only encountered twisted nails once, I had put down decking with them about 4 decades ago and later on had to remove a board that went bad. 5 min job I told the wife, I had to destroy the board to get them out.