Usually the turn signal stalk conrtols high beams, turn signals, cruise control if equipped and also the windshield washer squirters. The headlight circut does not run thru this switch, and I have yet to see any loss of regular low beams as a result of the multifunction switch (Stalk).
Some models have the option to turn of the DRL (Daytime running lights) and on a Ford its called "Twilight". Newer vehicles and cars in Canada require the lights to be on even during the day.
When you notice the problem, is it limited only to the headlights? What I mean is do the dash lights, tail running lights and front marker lights still come on?
If none of the dash lights, tail lights or marker lights come on, then I would be leaning twards the main headlight switch, however if your multifunction switch has taken quite a few knee's and is loose, it could be causing a short in the headlight circut, but again VERY VERY RARE, I usually only replace the multifunction switch for Turn Signal, Cruise and Washer complaints, as these are the only circuts inside the stalk itself.
The stalk only pushes a lever down in the column, which in turn trips a switch. This switch is not even part of the multifuction switch (stalk). I really doubt its the multi-function stalk.
Ill try and dig up some photos.