Only you can determine if the scabbing will interfere with a flat lay, since we can't see what you see. But I would definitely NOT install more underlayment as it will make your flooring mushy and could decouple the planks. If you use plywood for your underlayment, make sure it is branded as underlayment and has no voids or boogers that could cause problems. Install it with 7/32 narrow crown staples, probably 1" long, then apply your underlayment and flooring. Let us know if you run into more problems.