I am building a new home and the crew that put on the decking took a hammer and put 5 holes in the decking to pull their air hoses through the roof(unbelievable). the contractor did not catch it, I did, AFTER they had put on the felt and a GAF HD 30year shingle. The contractor filled the holes with construction adhesive and put a 2x6 between the rafters for support over the holes. Is this good enough or should I make him tear the sections off and do it right? Naturally worried about the shingles matching. they have been on about a month.