Normally a boiler comes with it's own transformer and controls and so does the air handler.
Then you run R from the boiler to Rh and R from the air handler to Rc and remove the jumper between them. Both of them have a C as each has it's own transformer. W/O being there we cannnot see what kind of homemade wiring the last person did. Sounds wrong to me.
No you cannot assume damage won't occur. I would recommend you get a experienced heating tech to trace the wiring and see what you have to be safe.
Then you run R from the boiler to Rh and R from the air handler to Rc and remove the jumper between them. Both of them have a C as each has it's own transformer. W/O being there we cannnot see what kind of homemade wiring the last person did. Sounds wrong to me.
No you cannot assume damage won't occur. I would recommend you get a experienced heating tech to trace the wiring and see what you have to be safe.